Howlers > Glycolysis rate-limiting step

The rate-limiting step of glycolysis

This page discusses the idea of a rate-limiting step in a metabolic pathway and is one of a series that discuss common errors in current textbooks of biochemistry.


All of the pages in this series are in urgent need of updating. The biochemical principles have not changed, of course, but textbooks have: some of those that were current when I first prepared these pages in 2000 have appeared in new editions, and others have ceased to be widely used. New books have appeared that are not discussed. Unfortunately I do not have easy access to any of the commonly used textbooks, as I work in a research (not teaching) environment in a country where English is not the everyday working language. I could buy them, of course, but that would represent rather a large investment for the sake of a few web pages.

Accordingly I should be grateful if someone would collaborate with me in the revision. If you have access to all of the textbooks published in English in the past ten years (say 1996 or later) that are commonly used for teaching biochemistry, and if you would like to help, please contact me at acornish@ibsm.cnrs-mrs.fr.

Examples of the problem

Lehninger, Nelson and Cox (p. 427) express the general idea that underlies much of the discussion in textbooks:

In every metabolic pathway there is at least one reaction that, in the cell, is far from equilibrium because of the relatively low activity of the enzyme that catalyzes it (Fig. 14-16). The rate of this reaction is not limited by substrate availability, but only by the activity of this enzyme. The reaction is therefore said to be enzyme-limited, and because its rate limits the rate of the whole reaction sequence, the step is called the rate-limiting step in the pathway. In general, these rate-limiting steps are very exergonic reactions and are therefore essentially irreversible under cellular conditions.

Afterwards they single out phosphofructokinase as the rate-limiting enzyme in glycolysis, a popular choice with other authors, such as Campbell (p. 348):

The phosphorylation of fructose 6-phosphate is highly exergonic and irreversible, and phosphofructokinase, the enzyme that catalyzes it, is the key enzyme in glycolysis.

Voet and Voet follow essentially the same pattern as above:

The metabolic flux through an entire pathway is determined by its rate-determining step (or steps) which, by definition, is much slower than the following reaction step(s). (p. 471)

PFK, an elaborately regulated enzyme functioning far from equilibrium, evidently is the major control point for glycolysis in muscle under most conditions. (p. 472, italics in the original)

However, pyruvate kinase also has its partisans, as on p. 588 of Garrett and Grisham:

The large negative ΔG of this reaction makes pyruvate kinase a suitable target site for regulation of glycolysis.

Stryer hedges his bets:

Phosphofructokinase is the key enzyme in the control of glycolysis (p. 493)

but (p. 495)...

Hexokinase and pyruvate kinase also set the pace of glycolysis.

The following statement from Abeles, Frey and Jencks (p. 589) is true enough as far as it goes, but it actually says very little, as it is equally true that glucose would be prevented from entering glycolysis if the reactions of phosphoglucomutase or aldolase were shut off, and no one calls them the rate-limiting enzymes of glycolysis:

An important control point in glycolysis is the phosphorylation of fructose-6-P catalyzed by phosphofructokinase. If that reaction were shut off, glucose would be prevented from entering glycolysis.

What happens in reality?

The standard idea is that phosphofructokinase controls flux through glycolysis, but as seen in the examples above there are two other popular candidates, hexokinase and pyruvate kinase. In any case, how true is it that phosphofructokinase, or any other enzyme, controls the glycolytic flux? The crucial experiment was done by Heinisch before any of these books were written; he found that overexpressing phosphofructokinase 3.5-fold in yeast had no measurable effect on the flux to ethanol. Other experiments have been done since then in other organisms. Why, then, do textbooks continue to claim that phosphofructokinase controls the glycolytic flux?

As the pages in this section of this site are intended to stick to facts and to discuss interpretations only insofar they are uncontroversial, that is as far as I shall go in this page about what happens in reality. I do, nonetheless, hold opinions about how the control and regulation of glycolysis should be understood, and anyone interested in these can find them in other pages on this site, e.g. those based on Chapter 10 of my book Fundamentals of Enzyme Kinetics.

Why does it matter?

The misconception at the heart of this question is at the heart of the failure of genetic engineering during the quarter century since it became technically feasible to produce useful effects on industrially important metabolic fluxes.

Textbook checklist

Abeles, Frey and Jencks OK No major error (but see above) pp. 82, 118
Campbell Bad Rate-limiting enzyme for glycolysis implied to be phosphofructokinase p. 348
Garrett and Grisham Poor Rate-limiting enzyme for glycolysis implied p. 588
Horton et al. OK No major error pp. 343–348
Lehninger, Nelson and Cox Bad Rate-limiting enzyme for glycolysis is phosphofructokinase p. 427
Mathews, van Holde and Ahern OK No major error p. 463–466
McKee and McKee OK No errors noted p. 194
Stryer Bad Candidates for all tastes pp. 493, 495
Voet and Voet Bad Phosphofructokinase step identified as rate-limiting p. 450
Zubay OK No major error p. 263

Reference

J. Heinisch (1986) Isolation and characterisation of the two structural genes coding for phosphofructokinase in yeast Mol. Gen Genet. 202, 75–82


Other common errors in textbooks

List of books considered